genewise output
Score 124.41 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000663_2.0   10 ARACLCLLFGLPAAGKSRLAEQLRGHAHSRGWRTLTVTYDLLIPERDWR 
                     A ACLC+L GLPAAGKS LA  +   A  RGWR   V YD LIPE  ++ 
                     APACLCVLCGLPAAGKSTLARTVLSTAAQRGWRATVVPYDDLIPEHAFQ 
OMLM01002072.1:50000 gcgtctgttgccgggatacgcagcaaggccgtagaggctggtacgcgtc 
                     cccgtgttggtcccgacctcgcttgcccaggggccttcaaattcaacta 
                     tgctatcgcgatttagccgccgcccctcatggatagggcttgcaatgtg 


SPP00000663_2.0   59                        QAEWKQHRKTVLACLERFLQ--HSLS 
                                             +EWK HR+ VL C+E++L+    L+ 
                                            HSEWKLHRQAVLQCIEQILKKPEMLA 
OMLM01002072.1:50147 GTTAGAG  Intron 1   TAGcagtaccacggtctagcacaacgacg 
                     <0-----[50147:50856]-0>agagatagacttagtaattaacattc 
                                            ctggagcagagggctggcgggtagga 


SPP00000663_2.0   83 EQTHTLPETHTLCEQADAGVWMR-FEQLLRDQSVFLSHTHSQPLVLLLD 
                     EQ   +              W +  + +L+  ++  S     PL+ LLD 
                     EQPSNI----------NGSAWEKCIQAVLQPVALDCSQVDRSPLLFLLD 
OMLM01002072.1:50935 gccaaa          agtgtgatacggcccggtgttcggctccctccg 
                     aacgat          agccgaagtacttactctagcatagccttttta 
                     gggcct          catagaactatgggtatgcctgtcgaatgtagt 


SPP00000663_2.0  131 DNFYYQSMRQQIQQLARR                          TCGFC 
                     DNFYY SMR ++ QLAR+                          + GFC 
                     DNFYYPSMRYEVYQLARK          S:Y[tat]        SLGFC 
OMLM01002072.1:51052 gatttcaaatggtccgaaTGTGAGCA  Intron 2   CAGATtcgtt 
                     aataacgtgaataatcga <1-----[51107:51551]-1>  ctgtg 
                     cccctgcgatagtgtgag                          gggcc 


SPP00000663_2.0  155 QVFLQCSLGVCVQRNRLRVRPLPDAVLLQMSERLEPPD            
                     QV LQC L  C+ RN  R +P+P  V+++M +RLE P+            
                     QVNLQCDLESCINRNLNRSQPIPTEVIMEMVKRLESPN            
OMLM01002072.1:51569 cgatctgtgttaaaacaatccacaggaagagactgtca            
                     atatagatacgtagatagcactccatttattagtacca            
                     ggtaattggccccacgcgtgctctgatgggggtggtat            


//
Making a Y in phase 1 intron
>OMLM01002072.1:subseq(17360,57689).pep
APACLCVLCGLPAAGKSTLARTVLSTAAQRGWRATVVPYDDLIPEHAFQHSEWKLHRQAV
LQCIEQILKKPEMLAEQPSNINGSAWEKCIQAVLQPVALDCSQVDRSPLLFLLDDNFYYP
SMRYEVYQLARKYSLGFCQVNLQCDLESCINRNLNRSQPIPTEVIMEMVKRLESPN
//
>OMLM01002072.1:subseq(17360,57689).[50000:51682].sp
GCTCCGGCCTGTCTATGTGTCTTGTGCGGGCTACCTGCTGCTGGAAAGTCCACCCTGGCC
CGCACGGTCCTCAGCACCGCTGCCCAACGTGGGTGGAGAGCTACAGTGGTGCCGTACGAT
GATTTGATCCCAGAACATGCGTTTCAGCACAGTGAGTGGAAACTGCACAGACAGGCAGTG
TTGCAGTGCATTGAGCAGATCCTGAAGAAGCCTGAAATGCTGGCAGAGCAGCCGAGCAAC
ATTAACGGATCTGCATGGGAAAAATGCATTCAAGCTGTGCTGCAGCCTGTAGCTTTGGAC
TGCTCTCAGGTTGACCGGTCACCACTTCTGTTTCTACTGGATGACAACTTCTACTATCCG
AGCATGAGATATGAAGTGTATCAGCTTGCGAGAAAGTATTCGCTGGGGTTCTGCCAGGTG
AATTTACAATGTGATTTGGAGTCCTGCATCAACAGAAACCTGAACAGGTCTCAGCCCATT
CCCACTGAGGTAATTATGGAGATGGTGAAGCGTTTGGAGTCTCCAAAT
//
OMLM01002072.1:subseq(17360,57689)	GeneWise	match	50000	51682	134.39	+	.	OMLM01002072.1:subseq(17360,57689)-genewise-prediction-1
OMLM01002072.1:subseq(17360,57689)	GeneWise	cds	50000	50146	0.00	+	0	OMLM01002072.1:subseq(17360,57689)-genewise-prediction-1
OMLM01002072.1:subseq(17360,57689)	GeneWise	intron	50147	50856	0.00	+	.	OMLM01002072.1:subseq(17360,57689)-genewise-prediction-1
OMLM01002072.1:subseq(17360,57689)	GeneWise	cds	50857	51106	0.00	+	0	OMLM01002072.1:subseq(17360,57689)-genewise-prediction-1
OMLM01002072.1:subseq(17360,57689)	GeneWise	intron	51107	51551	0.00	+	.	OMLM01002072.1:subseq(17360,57689)-genewise-prediction-1
OMLM01002072.1:subseq(17360,57689)	GeneWise	cds	51552	51682	0.00	+	2	OMLM01002072.1:subseq(17360,57689)-genewise-prediction-1
//